New genome annotation release (1.9) as of August 10 2022, with expert manual reannotation of 100 gene models (60 deleted from 5.1.8 and 40 newly created) and updating of gene names, acronyms and blast2go annotation
Release Notes

Welcome to Medicago truncatula A17 r5.0 genome portal

Whole-genome landscape of Medicago truncatula symbiotic genes.
Pecrix, Yann et al.
Nat Plants. 2018 Dec;4(12):1017-1025. doi: 10.1038/s41477-018-0286-7. Epub 2018 Nov 5.

More information about access protocol HERE

If you need any other feature to be displayed, feel free to contact us at

Genome Browser

Navigate through the genome assembly. Multiple tracks are available:

  • Structural annotation
  • Transcript alignments
  • Protein alignments
  • Repeats
  • ncRNAs

Sequence tools
Use blast suite to find feature similarities and extract features. Available databases are:
  • Genome assembly
  • Genes
  • mRNA, Proteins, CDS
  • ncRNAs
  • Promotor sequences
Search tools
Find results and annotations based on pre-computed analyses. These analyses are based on:
  • Blastp vs. model plants
  • Blastp vs. NR database
  • InterPro scan
  • Blast2GO
ID Converter
Nicknames target datasets:
  • Affymetrix / Nimblegen probe ids
  • Previous annotation accessions (releases 2, 3b 3.5.5, 4.0, Debang et al., Symbimics)
  • ESTs accessions (MtGI 5 to 11)
  • Oligos (MtCDJan2003,Mt6kRIT-Jan2003,Mt16kOLIplus-2004,MtSCDJun2006)