Welcome to Medicago truncatula A17 r5.0 genome portal

Whole-genome landscape of Medicago truncatula symbiotic genes.
Pecrix, Yann et al.
Nat Plants. 2018 Dec;4(12):1017-1025. doi: 10.1038/s41477-018-0286-7. Epub 2018 Nov 5.

More information about access protocol HERE

If you need any other feature to be displayed, feel free to contact us at lipm.info-toulouse@inra.fr

Genome Browser

Navigate through the genome assembly. Multiple tracks are available:

  • Structural annotation
  • Transcript alignments
  • Protein alignments
  • Repeats
  • ncRNAs

Sequence tools
Use blast suite to find feature similarities and extract features. Available databases are:
  • Genome assembly
  • Genes
  • mRNA, Proteins, CDS
  • ncRNAs
  • Promotor sequences
Search tools
Find results and annotations based on pre-computed analyses. These analyses are based on:
  • Blastp vs. model plants
  • Blastp vs. NR database
  • InterPro scan
  • Blast2GO
ID Converter
Nicknames target datasets:
  • Affymetrix / Nimblegen probe ids
  • Previous annotation accessions (releases 2, 3b 3.5.5, 4.0, Debang et al., Symbimics)
  • ESTs accessions (MtGI 5 to 11)
  • Oligos (MtCDJan2003,Mt6kRIT-Jan2003,Mt16kOLIplus-2004,MtSCDJun2006)