This portal gives a free access to data supporting the results of Formey et al. The small RNA diversity from
Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome Genome Biology. 2014
Table of Illumina smallRNA libraries:
| Library name | genotype | sample |
|---|---|---|
| sR | Jemalong A17 | Roots |
| sR2 | Jemalong A17 | Roots |
| sR4 | Jemalong A17 | Roots |
| sSNRSm | Jemalong A17 | S. meliloti-infected supernodulator roots |
| sSNR | Jemalong A17 | Supernodulator roots |
| sRGi | Jemalong A17 | Rhizophagus irregularis-infected roots |
| sRNoGi | Jemalong A17 | non infected roots |
| ssRRs | Jemalong A17 | R. solanacearum GMI1000-infected roots |
| ssRNoRs | Jemalong A17 | No infected roots |
| sRVaa | Jemalong A17 | Verticillium albo-atrum-infected Roots |
| Vir | Jemalong A17 | Leaves |
| sRMyc1 | Jemalong A17 | Factor Myc Roots |
| sRMyc2 | Jemalong A17 | Factor Myc Roots |
| sRMyc3 | Jemalong A17 | Factor Myc Roots |
| sRNod1 | Jemalong A17 | Factor Nod Roots |
| sRNod2 | Jemalong A17 | Factor Nod Roots |
| sRNod3 | Jemalong A17 | Factor Nod Roots |
| sRMycNodC1 | Jemalong A17 | Factor Myc/Nod Roots |
| sRMycNodC2 | Jemalong A17 | Factor Myc/Nod Roots |
| sRMycNodC3 | Jemalong A17 | Factor Myc/Nod Roots |
| Supplementary libraries | ||
| sRS | Jemalong A17 | Apex library grown in different environmental conditions |
| sRS2 | Jemalong A17 | Apex library grown in different environmental conditions |
| sRS4 | Jemalong A17 | Apex library grown in different environmental conditions |
Website sections:
Search: search for a small RNA, a miRNA precursor or a predicted target for a sequence of interest
Mtr-miRNA precursors: access tables containing all Mtr-miRNA precursors identified grouped by classes 1 to 5
miRNA homologs in plants: access a table indicating gene number of candidate Mtr-miRNAs in the Mt genome, as well as the number of homologs (defined using 0, 1 or 3 mismatches thresholds) in 6 other plant genomes (Lj: Lotus japonicus, Gm: Glycine max, Vv: Vitis vinifera, Pt: Populus trichocarpa, At: Arabidopsis thaliana, Os: Oryza sativa)
Targets: access a table of predicted targets for the candidate Mtr-miRNA. Target prediction was determined based on miRanda v3.3a software on the Medicago truncatula transcripts.
Download: download the different datasets (all small RNAs, candidate Mtr-miRNAs, candidate miRNA precursors, miRNA homologs in other plants, predicted targets)